1. Novocraft
Novoalign is a program for mapping short reads from the Illumina/SOLiD sequencing platform(s) to a reference genome. Package for aligning short reads to reference genomes
标签:Genomics, Whole Genome Resequencing, RNA-Seq Alignment, ChIP-Seq, MiRNA
2. SeqBuster
SeqBuster, a web-based bioinformatic tool offering a custom analysis of deep sequencing data at different levels, with special emphasis on the analysis of miRNA variants or isomiRs and the discovering of new small RNAs.
标签:Small RNA transcriptome, MiRNA
3. MirTools
Web server for microRNA profiling and discovery based on high-throughput sequencing
标签:Small RNA transcriptome, MiRNA
4. E-miR
Perl tools for processing miRNA sequencing data
标签:Small RNA transcriptome, MiRNA
5. DSAP
Automated multiple-task web service designed to provide a total solution to analyzing deep-sequencing small RNA datasets generated by next-generation sequencing technology
标签:Small RNA transcriptome, MiRNA
6. Chipster
User-friendly NGS data analysis software with built-in genome browser and workflow functionality. Chipster includes tools for ChIP-seq, RNA-seq, miRNA-seq and MeDIP-seq analysis, and functionality for exome-seq and CGH-seq will soon be added.
标签:ChIP-Seq, RNA-Seq, MiRNA-Seq,MeDIP-Seq
7. QSeq
QSeq is DNASTAR's Next-Gen application for RNA-Seq,ChIP-Seq, and miRNA alignment and analysis.
标签:ChIP-Seq, RNA-Seq, MiRNA